Parameter	Desc	Min	Max	Set Value
maxExpr	for any gene, if its maximum expression is less than maxExpr, then this gene will be filtered	-100	200
kmin	minimum value of k to be used for K-means	0	100
kmax	maximum value of k to be used fro K-means	0	100
stepSize	step size of k	0	100
stoppingThr	when to stop K-means algorithm, expressed as the percent change of the objective function in two consective iterations of K-means	0	100
kmeansSamplingRatio	percent of genes sampled for k-means	0	100
numIterations	number of times to run K-means for each value of k	0	1000
comemThr	the threshould for comembership score (if less than this threshold, then the two genes will not be connected in the graph)	0	100
minClusterSize	cutoff for cluster size	0	100
CVThr	the threshold of CV (coefficient of variance) for filtering genes (genes whose CV < this value will be skipped)	0	100

Parameter	Desc	Sample File	Upload File
dataFile	The microarray data file	ColonCancerTF.txt